JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TICAM2_chr5_115573496_115607479	0/0	t0014	2496	3	3	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0015	2496	2	2	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0016	2497	2	2	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0017	2496	2	2	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0018	2497	2	2	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0019	2497	2	0	0	2	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0020	2496	1	0	0	1	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0021	2496	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0022	2497	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0023	2496	1	0	0	1	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0024	2496	1	0	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0025	2496	1	0	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0026	2497	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0027	2496	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0028	2496	1	0	0	1	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0029	2497	1	1	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0030	2497	1	0	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICRR_chr15_89570469_89633023	1/1	t0001	1056	201	54	36	81	9	19	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0002	1056	89	7	16	50	2	14	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0003	1054	16	1	1	11	2	1	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0004	1056	12	9	3	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0005	1056	5	5	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0006	1060	3	2	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0007	1056	3	1	2	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0008	1056	3	3	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0009	1056	2	0	0	0	2	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0010	1056	1	0	1	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0011	1056	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0012	1056	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0013	1056	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0014	1056	1	0	0	0	1	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0015	1056	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0016	1060	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0017	1060	1	1	0	0	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0018	1056	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TICRR_chr15_89570469_89633023	0/0	t0019	1056	1	0	0	1	0	0	copy fasta	TICRR	chr15	89570469	89633023
TIE1_chr1_43295982_43328108	1/1	t0001	477	396	93	74	175	12	40	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	t0002	477	1	0	0	1	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	t0003	477	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	t0004	477	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIE1_chr1_43295982_43328108	0/0	t0005	477	1	1	0	0	0	0	copy fasta	TIE1	chr1	43295982	43328108
TIFAB_chr5_135439226_135457351	0/1	t0001	5382	154	7	37	80	5	24	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0002	5382	86	1	25	51	1	8	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0003	5382	53	13	11	22	3	4	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0004	5382	21	1	0	15	2	3	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0005	5382	18	15	3	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0006	5382	15	0	1	12	0	2	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0007	5382	13	0	0	13	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0008	5382	8	8	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0009	5382	7	5	1	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351