JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIFAB_chr5_135439226_135457351	0/0	t0010	5382	5	5	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0011	5382	4	2	0	0	0	2	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0012	5382	4	4	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0013	5383	4	4	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0014	5382	3	3	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0015	5382	3	3	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0016	5383	2	2	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	1/0	t0017	5382	2	0	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0018	5382	2	0	0	2	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0019	5382	2	2	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0020	5382	2	0	2	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0021	5382	2	0	0	0	1	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0022	5382	2	0	0	2	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0023	5382	2	2	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0024	5383	2	1	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0025	5382	2	1	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0026	5382	2	2	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0027	5382	1	0	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0028	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0029	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0030	5382	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0031	5382	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0032	5359	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0033	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0034	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0035	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0036	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0037	5382	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0038	5382	1	0	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0039	5382	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0040	5382	1	0	0	0	1	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0041	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0042	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0043	5382	1	0	0	0	0	1	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0044	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0045	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0046	5382	1	0	0	0	1	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0047	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0048	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0049	5391	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0050	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0051	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0052	3573	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0053	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0054	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0055	5382	1	0	0	1	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0056	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0057	5382	1	0	1	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0058	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0059	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351