JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIFAB_chr5_135439226_135457351	0/0	t0060	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0061	5382	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFAB_chr5_135439226_135457351	0/0	t0062	5383	1	1	0	0	0	0	copy fasta	TIFAB	chr5	135439226	135457351
TIFA_chr4_112269537_112290904	0/1	t0001	3603	114	32	24	39	5	13	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0002	3603	112	26	12	68	1	5	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	1/0	t0003	3609	85	6	25	39	3	11	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0004	3609	43	0	0	43	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0005	3609	16	7	3	5	0	1	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0006	3602	11	0	0	7	1	3	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0007	3603	5	4	1	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0008	3609	5	0	4	0	0	1	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0009	3603	3	3	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0010	3603	3	3	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0011	3603	2	2	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0012	3603	2	0	0	2	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0013	3609	2	0	0	2	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0014	3609	2	2	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0015	3609	2	2	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0016	3609	1	1	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0017	3603	1	1	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0018	3603	1	0	1	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0019	3603	1	0	0	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0020	3603	1	0	0	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0021	3603	1	0	0	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0022	3603	1	1	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0023	3603	1	1	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0024	3603	1	0	0	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0025	3603	1	0	0	1	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIFA_chr4_112269537_112290904	0/0	t0026	3609	1	1	0	0	0	0	copy fasta	TIFA	chr4	112269537	112290904
TIGAR_chr12_4316213_4365028	0/1	t0001	7397	47	0	6	32	4	4	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0002	7416	39	1	4	33	1	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0003	7396	25	2	1	18	0	4	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0004	7400	17	7	9	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0005	7400	14	3	2	3	4	2	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0006	7400	12	0	3	5	0	4	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0007	7398	8	8	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0008	7403	8	1	2	1	0	4	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0009	7396	7	6	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0010	7403	7	2	2	1	0	2	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0011	7397	6	0	4	2	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0012	7397	6	1	3	0	1	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0013	7403	6	0	0	6	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0014	7414	6	0	0	6	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0015	7398	5	4	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0016	7400	5	0	0	5	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0017	7396	4	0	0	4	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0018	7398	4	0	1	3	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0019	7399	4	3	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0020	7400	4	4	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0021	7400	3	0	0	3	0	0	copy fasta	TIGAR	chr12	4316213	4365028