JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGAR_chr12_4316213_4365028	0/0	t0122	7397	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0123	7400	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0124	7396	1	0	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0125	7404	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0126	7402	1	0	0	0	1	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0127	7396	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0128	7406	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0129	7396	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0130	7401	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0131	7396	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0132	7413	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0133	7400	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0134	7401	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0135	7400	1	0	0	0	1	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0136	7399	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0137	7400	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0138	7400	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0139	7400	1	0	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0140	7400	1	0	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0141	7400	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0142	7415	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0143	7416	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0144	7418	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0145	7415	1	0	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0146	7415	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0147	7414	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0148	7413	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0149	7415	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0150	7414	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0151	7414	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0152	7414	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0153	7416	1	0	0	0	0	1	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0154	7402	1	0	0	1	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0155	7404	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0156	7403	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0157	7400	1	0	1	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0158	7402	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0159	7402	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0160	7403	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGAR_chr12_4316213_4365028	0/0	t0161	7402	1	1	0	0	0	0	copy fasta	TIGAR	chr12	4316213	4365028
TIGD1_chr2_232538883_232555557	0/0	t0001	4908	97	3	22	58	2	12	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	1/0	t0002	4900	66	33	14	8	2	8	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/1	t0003	4900	58	16	9	21	1	10	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0004	4900	55	5	5	36	1	8	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0005	4909	30	0	1	28	0	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0006	4911	20	4	1	12	1	2	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0007	4899	14	6	4	4	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0008	4907	11	1	3	6	0	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0009	4901	10	3	2	4	0	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0010	4899	9	2	1	2	4	0	copy fasta	TIGD1	chr2	232538883	232555557