JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRD8_chr5_138134770_138183630	1/1	t0001	321	371	82	71	162	14	40	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	t0002	321	4	3	1	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	t0003	321	2	0	0	2	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD8_chr5_138134770_138183630	0/0	t0004	321	1	1	0	0	0	0	copy fasta	BRD8	chr5	138134770	138183630
BRD9_chr5_858741_897801	1/1	t0001	872	250	34	62	103	10	39	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0002	872	66	24	3	37	0	2	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0003	872	7	6	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0004	872	5	0	3	0	0	2	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0005	872	5	4	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0006	872	5	5	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0007	872	5	5	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0008	871	5	5	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0009	880	4	4	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0010	871	3	3	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0011	872	2	0	0	2	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0012	871	2	1	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0013	872	1	0	1	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0014	872	1	0	0	1	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0015	872	1	0	0	0	0	1	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0016	872	1	0	0	1	0	0	copy fasta	BRD9	chr5	858741	897801
BRD9_chr5_858741_897801	0/0	t0017	872	1	1	0	0	0	0	copy fasta	BRD9	chr5	858741	897801
BRDT_chr1_91944401_92019421	0/1	t0001	467	166	27	34	70	9	25	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0002	467	130	44	24	49	3	10	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0003	467	8	8	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	1/0	t0004	467	5	3	0	1	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0005	467	2	0	0	2	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0006	467	2	0	2	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0007	467	1	0	0	0	0	1	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0008	467	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0009	467	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0010	467	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRDT_chr1_91944401_92019421	0/0	t0011	467	1	1	0	0	0	0	copy fasta	BRDT	chr1	91944401	92019421
BRF1_chr14_105204286_105306001	1/1	t0001	1638	35	9	12	8	2	2	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0002	1638	19	19	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0003	1638	3	3	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0004	1638	3	1	2	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0005	1638	3	3	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0006	1638	2	2	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0007	1638	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0008	1638	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0009	1638	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0010	1638	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0011	1638	1	1	0	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0012	1638	1	0	1	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF1_chr14_105204286_105306001	0/0	t0013	1638	1	0	1	0	0	0	copy fasta	BRF1	chr14	105204286	105306001
BRF2_chr8_37838268_37854861	1/1	t0001	1301	360	78	71	152	16	41	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0002	1301	4	4	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0003	1301	4	4	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0004	1301	2	2	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0005	1301	1	0	1	0	0	0	copy fasta	BRF2	chr8	37838268	37854861