JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGD1_chr2_232538883_232555557	0/0	t0011	4910	4	0	0	2	1	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0012	4901	3	0	0	3	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0013	4910	3	3	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0014	4908	3	0	0	3	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0015	4911	3	3	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0016	4900	3	0	0	3	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0017	4900	3	0	0	0	0	3	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0018	4909	2	2	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0019	4909	2	0	0	2	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0020	4900	2	0	2	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0021	4910	2	0	0	2	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0022	4908	2	0	0	0	2	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0023	4900	2	0	0	2	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0024	4899	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0025	4909	1	0	0	0	1	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0026	4901	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0027	4910	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0028	4908	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0029	4908	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0030	4907	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0031	4908	1	0	0	0	1	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0032	4908	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0033	4907	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0034	4908	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0035	4901	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0036	4900	1	0	0	0	1	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0037	4900	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0038	4900	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0039	4900	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0040	4899	1	0	0	0	1	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0041	4899	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0042	4911	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0043	4911	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0044	4909	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0045	4907	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0046	4911	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0047	4900	1	0	0	0	0	1	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0048	4908	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0049	4909	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0050	4908	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0051	4900	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0052	4900	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0053	4900	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0054	4911	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0055	4911	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0056	4911	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0057	4907	1	0	1	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0058	4907	1	1	0	0	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD1_chr2_232538883_232555557	0/0	t0059	4900	1	0	0	1	0	0	copy fasta	TIGD1	chr2	232538883	232555557
TIGD2_chr4_89106533_89119901	0/1	t0001	1609	296	47	58	145	15	30	copy fasta	TIGD2	chr4	89106533	89119901