JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGD2_chr4_89106533_89119901	1/0	t0002	1609	49	23	12	8	2	3	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0003	1609	48	1	6	33	1	7	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0004	1609	16	15	1	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0005	1609	4	4	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0006	1609	3	0	0	2	0	1	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0007	1609	3	3	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0008	1609	2	2	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0009	1609	2	1	0	0	0	1	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0010	1609	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0011	1609	1	0	1	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0012	1609	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0013	1609	1	1	0	0	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0014	1609	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0015	1609	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD2_chr4_89106533_89119901	0/0	t0016	1609	1	0	0	1	0	0	copy fasta	TIGD2	chr4	89106533	89119901
TIGD3_chr11_65349751_65362613	1/1	t0001	613	362	74	61	165	18	42	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0002	613	8	0	0	8	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0003	613	6	5	1	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0004	613	5	5	0	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0005	613	4	4	0	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0006	613	3	3	0	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0007	613	1	0	0	1	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0008	613	1	1	0	0	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0009	613	1	0	0	1	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD3_chr11_65349751_65362613	0/0	t0010	613	1	0	0	1	0	0	copy fasta	TIGD3	chr11	65349751	65362613
TIGD4_chr4_152764354_152784730	1/1	t0001	900	319	60	52	151	13	41	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	t0002	900	89	22	13	46	1	7	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	t0003	900	9	8	1	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	t0004	900	6	6	0	0	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD4_chr4_152764354_152784730	0/0	t0005	900	1	0	0	1	0	0	copy fasta	TIGD4	chr4	152764354	152784730
TIGD5_chr8_143592831_143608224	0/0	t0001	3466	104	2	28	52	9	13	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0002	3466	91	11	13	59	0	8	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0003	3466	45	14	3	24	0	4	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/1	t0004	3466	42	6	14	15	0	6	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0005	3466	12	0	3	6	1	2	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0006	3467	11	0	2	7	0	2	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0007	3466	8	3	2	0	2	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0008	3466	6	0	0	2	1	3	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0009	3460	6	6	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0010	3466	6	6	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0011	3467	5	0	0	4	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0012	3466	5	4	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0013	3465	4	0	3	0	1	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0014	3466	4	4	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0015	3466	3	3	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0016	3467	3	0	1	2	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0017	3466	3	3	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0018	3466	3	3	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0019	3466	3	3	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0020	3462	3	3	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224