JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGD5_chr8_143592831_143608224	0/0	t0021	3466	2	1	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0022	3466	2	0	0	2	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0023	3465	2	0	1	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0024	3467	2	0	0	2	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0025	3466	2	1	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0026	3466	2	2	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0027	3466	2	1	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0028	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0029	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0030	3465	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0031	3466	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0032	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0033	3466	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0034	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0035	3466	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0036	3466	1	0	0	0	1	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0037	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0038	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0039	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0040	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0041	3465	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0042	3464	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0043	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0044	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0045	3465	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0046	3467	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0047	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0048	3466	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0049	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0050	3467	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0051	3461	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0052	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0053	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0054	3467	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0055	3466	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0056	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0057	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0058	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0059	3444	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0060	3466	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0061	3466	1	0	1	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0062	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0063	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0064	3467	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0065	3466	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0066	3466	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0067	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0068	3465	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0069	3468	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0070	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224