JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGD5_chr8_143592831_143608224	0/0	t0071	3462	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0072	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0073	3466	1	0	0	0	0	1	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0074	3467	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0075	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0076	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0077	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0078	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0079	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0080	3465	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0081	3466	1	1	0	0	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0082	3465	1	0	0	0	1	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD5_chr8_143592831_143608224	0/0	t0083	3466	1	0	0	1	0	0	copy fasta	TIGD5	chr8	143592831	143608224
TIGD6_chr5_149988118_150005654	0/1	t0001	1928	134	8	31	67	7	20	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	1/0	t0002	1928	127	0	16	89	4	17	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0003	1928	68	34	9	19	1	5	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0004	1928	41	5	11	24	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0005	1924	16	16	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0006	1924	16	14	2	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0007	1928	6	2	3	0	1	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0008	1919	5	5	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0009	1928	4	0	0	3	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0010	1924	3	3	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0011	1944	3	3	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0012	1928	2	0	2	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0013	1928	2	0	1	0	1	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0014	1928	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0015	1924	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0016	1928	1	0	0	0	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0017	1928	1	0	0	1	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0018	1924	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0019	1928	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0020	1928	1	1	0	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0021	1928	1	0	0	0	0	1	copy fasta	TIGD6	chr5	149988118	150005654
TIGD6_chr5_149988118_150005654	0/0	t0022	1928	1	0	1	0	0	0	copy fasta	TIGD6	chr5	149988118	150005654
TIGD7_chr16_3293808_3310430	0/1	t0001	1772	242	55	39	118	6	23	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	1/0	t0002	1772	67	0	20	27	7	12	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0003	1772	29	2	15	6	3	3	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0004	1767	10	10	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0005	1772	6	6	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0006	1772	6	2	0	4	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0007	1772	5	5	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0008	1772	3	0	0	0	0	3	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0009	1772	3	3	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0010	1772	3	3	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0011	1772	2	2	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0012	1772	2	0	0	2	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0013	1772	2	2	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0014	1772	1	0	0	1	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0015	1772	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430