JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIGD7_chr16_3293808_3310430	0/0	t0016	1772	1	0	0	0	0	1	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0017	1772	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0018	1772	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0019	1772	1	0	0	1	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0020	1772	1	0	0	1	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGD7_chr16_3293808_3310430	0/0	t0021	1772	1	1	0	0	0	0	copy fasta	TIGD7	chr16	3293808	3310430
TIGIT_chr3_114289028_114315288	0/1	t0001	2192	267	36	49	155	7	19	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0002	2196	67	6	19	24	6	12	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0003	2192	19	13	2	0	0	4	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0004	2192	16	16	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0005	2192	12	0	8	1	1	2	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	1/0	t0006	2192	10	8	1	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0007	2192	5	5	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0008	2192	4	4	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0009	2195	3	3	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0010	2192	2	0	0	2	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0011	2192	2	2	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0012	2192	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0013	2192	1	1	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0014	2192	1	1	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0015	2192	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0016	2192	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0017	2192	1	1	0	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0018	2192	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0019	2192	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0020	2194	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0021	2194	1	0	0	0	1	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0022	2194	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0023	2196	1	0	1	0	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0024	2196	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0025	2196	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0026	2196	1	0	0	0	1	0	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0027	2196	1	0	0	0	0	1	copy fasta	TIGIT	chr3	114289028	114315288
TIGIT_chr3_114289028_114315288	0/0	t0028	2192	1	0	0	1	0	0	copy fasta	TIGIT	chr3	114289028	114315288
TIMD4_chr5_156914292_156968226	1/1	t0001	194	272	65	64	98	16	27	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	t0002	194	26	9	2	14	0	1	copy fasta	TIMD4	chr5	156914292	156968226
TIMD4_chr5_156914292_156968226	0/0	t0003	193	14	14	0	0	0	0	copy fasta	TIMD4	chr5	156914292	156968226
TIMELESS_chr12_56411363_56454426	0/1	t0001	1532	313	54	60	150	15	33	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0002	1532	40	1	12	20	1	6	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0003	1532	11	11	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0004	1516	7	0	0	7	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	1/0	t0005	1532	7	6	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0006	1532	6	6	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0007	1532	4	4	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0008	1532	3	3	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0009	1516	2	0	0	2	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0010	1532	2	0	0	1	0	1	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0011	1532	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0012	1532	1	1	0	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426
TIMELESS_chr12_56411363_56454426	0/0	t0013	1532	1	0	1	0	0	0	copy fasta	TIMELESS	chr12	56411363	56454426