JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMM10_chr11_57523464_57535754	0/0	t0011	402	4	0	0	4	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0012	388	3	2	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0013	378	2	0	2	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0014	396	2	2	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0015	400	2	2	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0016	396	1	0	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0017	410	1	0	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0018	420	1	0	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0019	392	1	1	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0020	398	1	1	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0021	395	1	0	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0022	401	1	0	0	1	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM10_chr11_57523464_57535754	0/0	t0023	388	1	1	0	0	0	0	copy fasta	TIMM10	chr11	57523464	57535754
TIMM13_chr19_2420625_2432586	1/1	t0001	1377	84	7	16	37	7	15	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0002	1377	82	18	26	24	4	10	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0003	1416	33	24	6	1	0	2	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0004	1414	30	0	3	23	0	4	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0005	1416	17	1	9	0	2	5	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0006	1416	13	2	0	11	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0007	1416	10	10	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0008	1420	7	4	2	0	1	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0009	1416	6	6	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0010	1377	3	1	2	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0011	1377	2	1	1	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0012	1377	2	0	2	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0013	1416	2	2	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0014	1377	1	0	0	1	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0015	1377	1	0	0	0	0	1	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0016	1416	1	1	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0017	1420	1	1	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0018	1414	1	0	0	0	0	1	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0019	1414	1	0	0	1	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0020	1415	1	0	0	1	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0021	1414	1	0	0	1	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0022	1377	1	0	1	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0023	1416	1	1	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM13_chr19_2420625_2432586	0/0	t0024	1420	1	1	0	0	0	0	copy fasta	TIMM13	chr19	2420625	2432586
TIMM17A_chr1_201950503_201975664	1/0	t0001	1135	267	57	55	131	7	16	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0002	1135	155	20	22	83	7	23	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/1	t0003	1135	16	2	7	1	4	1	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0004	1135	10	10	0	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0005	1135	5	0	0	5	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0006	1135	4	4	0	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0007	1135	3	2	1	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0008	1135	2	0	0	0	0	2	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0009	1135	2	1	1	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0010	1135	1	1	0	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0011	1125	1	0	0	1	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0012	1135	1	1	0	0	0	0	copy fasta	TIMM17A	chr1	201950503	201975664
TIMM17A_chr1_201950503_201975664	0/0	t0013	1135	1	0	0	1	0	0	copy fasta	TIMM17A	chr1	201950503	201975664