JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMM23B_chr10_49937053_49979850	0/0	t0025	1929	1	0	0	0	0	1	copy fasta	TIMM23B	chr10	49937053	49979850
TIMM23_chr10_45967489_46008742	1/1	t0001	561	380	72	70	180	16	40	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	t0002	561	16	14	2	0	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM23_chr10_45967489_46008742	0/0	t0003	561	4	0	0	4	0	0	copy fasta	TIMM23	chr10	45967489	46008742
TIMM29_chr19_10923811_10935254	1/1	t0001	565	406	80	74	196	14	40	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	t0002	565	4	0	0	0	0	4	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	t0003	565	1	1	0	0	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM29_chr19_10923811_10935254	0/0	t0004	565	1	1	0	0	0	0	copy fasta	TIMM29	chr19	10923811	10935254
TIMM44_chr19_7921718_7948666	1/0	t0001	485	231	45	58	80	12	35	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/1	t0002	485	89	5	16	54	2	11	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0003	485	27	7	5	13	2	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0004	485	25	24	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0005	485	5	5	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0006	485	3	3	0	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0007	485	2	1	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0008	485	1	0	1	0	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM44_chr19_7921718_7948666	0/0	t0009	485	1	0	0	1	0	0	copy fasta	TIMM44	chr19	7921718	7948666
TIMM50_chr19_39475838_39498779	0/0	t0001	3977	37	2	5	28	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0002	3978	19	0	6	12	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/1	t0003	3978	19	0	3	8	3	4	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0004	3981	14	0	4	9	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0005	3975	14	9	3	0	2	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0006	3979	13	0	1	7	0	5	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0007	3982	11	0	2	7	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	1/0	t0008	3976	11	5	4	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0009	3977	10	0	2	7	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0010	3983	9	0	4	3	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0011	3982	9	1	2	5	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0012	3980	8	1	1	3	1	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0013	3982	7	2	2	3	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0014	3981	7	1	4	0	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0015	3983	5	0	1	3	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0016	3981	5	0	0	5	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0017	3977	5	1	3	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0018	3978	5	0	0	5	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0019	3982	5	0	0	5	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0020	3974	4	4	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0021	3984	4	0	1	2	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0022	3972	4	0	1	2	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0023	3981	4	0	0	0	4	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0024	3976	4	1	2	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0025	3975	4	0	0	4	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0026	3971	4	4	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0027	3984	4	0	0	4	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0028	3975	3	1	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0029	3974	3	0	0	3	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0030	3977	3	2	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0031	3976	3	3	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0032	3981	3	0	1	1	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0033	3976	3	3	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779