JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRF2_chr8_37838268_37854861	0/0	t0006	1301	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0007	1301	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0008	1301	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0009	1301	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0010	1291	1	1	0	0	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0011	1301	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0012	1301	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0013	1301	1	0	0	1	0	0	copy fasta	BRF2	chr8	37838268	37854861
BRF2_chr8_37838268_37854861	0/0	t0014	1301	1	0	0	0	0	1	copy fasta	BRF2	chr8	37838268	37854861
BRI3BP_chr12_124988645_125036231	0/0	t0001	5947	125	12	30	67	7	9	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0002	5944	37	3	7	21	1	5	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/1	t0003	5941	31	1	10	13	0	6	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0004	5943	17	3	2	9	0	3	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	1/0	t0005	5948	12	1	1	6	2	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0006	5948	11	1	1	7	0	2	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0007	5948	11	1	5	4	0	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0008	5947	10	0	0	10	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0009	5946	6	6	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0010	5946	5	4	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0011	5942	5	0	1	3	0	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0012	5945	4	0	0	4	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0013	5944	4	4	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0014	5944	4	3	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0015	5944	4	4	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0016	5945	4	4	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0017	5948	4	0	2	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0018	5945	3	0	1	0	0	2	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0019	5944	3	0	0	3	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0020	5943	3	3	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0021	5942	3	0	1	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0022	5944	3	0	1	0	0	2	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0023	5949	3	3	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0024	5947	3	3	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0025	5946	3	1	1	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0026	5947	3	0	3	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0027	5947	3	0	0	0	0	3	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0028	5949	2	0	2	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0029	5941	2	0	0	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0030	5947	2	0	2	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0031	5947	2	2	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0032	5944	2	1	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0033	5946	2	2	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0034	5947	2	2	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0035	5945	2	2	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0036	5947	2	0	0	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0037	5947	2	0	0	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0038	5947	2	0	2	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0039	5946	2	0	0	2	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0040	5941	2	0	0	0	0	2	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0041	5947	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231