JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMM50_chr19_39475838_39498779	0/0	t0034	3980	2	0	0	0	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0035	3976	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0036	3976	2	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0037	3975	2	0	1	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0038	3981	2	0	0	0	0	2	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0039	3976	2	0	0	1	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0040	3979	2	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0041	3983	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0042	3980	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0043	3985	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0044	3983	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0045	3982	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0046	3978	2	0	2	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0047	3982	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0048	3973	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0049	3981	2	0	1	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0050	3977	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0051	3978	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0052	3978	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0053	3977	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0054	3976	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0055	3979	2	0	1	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0056	3979	2	0	0	1	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0057	3976	2	0	0	0	1	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0058	3970	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0059	3966	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0060	3983	2	0	0	2	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0061	3959	2	2	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0062	3979	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0063	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0064	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0065	3981	1	0	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0066	3977	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0067	3981	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0068	3971	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0069	3974	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0070	3977	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0071	3979	1	0	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0072	3977	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0073	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0074	3969	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0075	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0076	3977	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0077	3974	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0078	3975	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0079	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0080	3978	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0081	3981	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0082	3980	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0083	3971	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779