JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TIMM50_chr19_39475838_39498779	0/0	t0084	3984	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0085	3984	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0086	3981	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0087	3986	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0088	3985	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0089	3973	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0090	3983	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0091	3982	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0092	3982	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0093	3978	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0094	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0095	3981	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0096	3975	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0097	3980	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0098	3984	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0099	3984	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0100	3972	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0101	3983	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0102	3980	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0103	3982	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0104	3976	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0105	3980	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0106	3975	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0107	3981	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0108	3978	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0109	3969	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0110	3978	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0111	3981	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0112	3980	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0113	3973	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0114	3981	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0115	3974	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0116	3980	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0117	3979	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0118	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0119	3981	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0120	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0121	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0122	3972	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0123	3978	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0124	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0125	3975	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0126	3982	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0127	3976	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0128	3973	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0129	3977	1	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0130	3979	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0131	3978	1	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0132	3977	1	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0133	3978	1	0	0	1	0	copy fasta	TIMM50	chr19	39475838	39498779