JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMM50_chr19_39475838_39498779	0/0	t0134	3980	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0135	3979	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0136	3977	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0137	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0138	3976	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0139	3976	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0140	3979	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0141	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0142	3977	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0143	3977	1	0	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0144	3975	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0145	3978	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0146	3977	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0147	3971	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0148	3976	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0149	3975	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0150	3970	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0151	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0152	3979	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0153	3979	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0154	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0155	3978	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0156	3978	1	0	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0157	3982	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0158	3973	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0159	3981	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0160	3966	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0161	3979	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0162	3983	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0163	3977	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0164	3983	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0165	3977	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0166	3977	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0167	3976	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0168	3981	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0169	3980	1	0	0	0	0	1	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0170	3981	1	0	0	1	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0171	3981	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0172	3956	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0173	3957	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0174	3960	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0175	3977	1	0	1	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM50_chr19_39475838_39498779	0/0	t0176	3976	1	1	0	0	0	0	copy fasta	TIMM50	chr19	39475838	39498779
TIMM8A_chrX_101340661_101353742	1/1	t0001	917	130	6	28	71	11	12	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	t0002	920	123	49	12	43	2	17	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	t0003	920	53	16	9	27	0	1	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	t0004	920	5	5	0	0	0	0	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	t0005	921	1	0	0	1	0	0	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8A_chrX_101340661_101353742	0/0	t0006	917	1	0	1	0	0	0	copy fasta	TIMM8A	chrX	101340661	101353742
TIMM8B_chr11_112079800_112091756	1/1	t0001	529	193	42	51	70	8	20	copy fasta	TIMM8B	chr11	112079800	112091756