JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMM8B_chr11_112079800_112091756	0/0	t0002	532	126	9	18	89	2	8	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0003	530	46	33	4	7	0	2	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0004	533	13	1	3	7	0	2	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0005	531	11	8	0	3	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0006	529	3	3	0	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0007	532	2	0	0	2	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0008	530	1	1	0	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM8B_chr11_112079800_112091756	0/0	t0009	532	1	1	0	0	0	0	copy fasta	TIMM8B	chr11	112079800	112091756
TIMM9_chr14_58403495_58432531	0/1	t0001	983	313	41	58	172	8	33	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	1/0	t0002	983	52	43	4	0	0	4	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0003	983	6	0	0	6	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0004	983	1	1	0	0	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0005	983	1	1	0	0	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0006	983	1	0	0	0	0	1	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0007	983	1	1	0	0	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0008	983	1	1	0	0	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0009	983	1	0	0	1	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMM9_chr14_58403495_58432531	0/0	t0010	983	1	0	0	1	0	0	copy fasta	TIMM9	chr14	58403495	58432531
TIMMDC1_chr3_119493547_119530090	0/0	t0001	1522	162	33	33	75	6	15	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0002	1522	69	0	13	50	2	4	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0003	1522	58	1	18	30	2	7	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0004	1522	49	4	11	20	4	10	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0005	1522	42	33	4	5	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0006	1522	17	8	0	1	0	8	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0007	1522	6	6	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0008	1522	6	0	0	6	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0009	1520	5	5	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0010	1518	4	0	0	3	0	1	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0011	1522	3	0	1	0	0	2	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0012	1522	2	0	0	2	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0013	1522	1	0	0	0	0	1	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0014	1522	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0015	1522	1	1	0	0	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0016	1522	1	0	0	1	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMMDC1_chr3_119493547_119530090	0/0	t0017	1522	1	0	0	1	0	0	copy fasta	TIMMDC1	chr3	119493547	119530090
TIMP1_chrX_47577436_47591789	1/1	t0001	146	324	78	57	145	13	29	copy fasta	TIMP1	chrX	47577436	47591789
TIMP1_chrX_47577436_47591789	0/0	t0002	146	3	0	0	2	0	1	copy fasta	TIMP1	chrX	47577436	47591789
TIMP2_chr17_78847977_78930387	0/0	t0001	2989	55	15	10	19	3	8	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0002	2989	51	9	8	26	0	8	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0003	2990	43	18	11	9	0	5	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	1/0	t0004	2990	22	6	7	6	0	2	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0005	2988	21	3	4	8	3	3	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0006	2988	17	4	2	8	1	2	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0007	2989	15	0	0	14	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0008	2988	9	0	0	7	0	2	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0009	2990	7	1	0	6	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0010	2988	4	3	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0011	2988	4	4	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/1	t0012	2990	4	1	0	0	0	2	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0013	2991	3	1	1	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387