JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMP2_chr17_78847977_78930387	0/0	t0014	2990	3	0	0	1	2	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0015	2990	3	3	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0016	2989	2	0	0	2	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0017	2990	2	1	0	0	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0018	2990	2	2	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0019	2990	2	0	0	1	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0020	2989	2	0	0	2	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0021	2990	2	2	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0022	2990	2	2	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0023	2989	2	0	0	0	0	2	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0024	2989	2	0	2	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0025	2988	2	0	0	2	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0026	2988	2	2	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0027	2990	2	2	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0028	2990	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0029	2990	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0030	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0031	2988	1	0	0	0	1	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0032	2989	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0033	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0034	2988	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0035	2988	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0036	2990	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0037	2990	1	0	0	0	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0038	2990	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0039	2990	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0040	2990	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0041	2990	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0042	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0043	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0044	2989	1	0	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0045	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0046	2988	1	0	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0047	2988	1	0	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0048	2988	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0049	2989	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0050	2990	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0051	2990	1	0	1	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0052	2989	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0053	2990	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0054	2990	1	0	0	0	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0055	2989	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0056	2989	1	0	0	1	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0057	2988	1	0	0	0	0	1	copy fasta	TIMP2	chr17	78847977	78930387
TIMP2_chr17_78847977_78930387	0/0	t0058	2988	1	1	0	0	0	0	copy fasta	TIMP2	chr17	78847977	78930387
TIMP3_chr22_32796705_32868041	0/0	t0001	3961	75	12	8	35	1	19	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/1	t0002	3961	74	5	15	47	3	3	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	1/0	t0003	3962	66	6	15	33	6	5	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0004	3962	25	4	3	13	0	5	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0005	3962	20	2	15	0	2	1	copy fasta	TIMP3	chr22	32796705	32868041