JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIMP3_chr22_32796705_32868041	0/0	t0006	3962	17	16	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0007	3962	13	9	2	2	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0008	3961	8	7	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0009	3962	8	8	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0010	3961	7	1	4	0	0	2	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0011	3963	7	4	0	3	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0012	3960	6	1	2	2	0	1	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0013	3960	5	5	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0014	3963	4	0	0	4	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0015	3963	4	2	0	1	0	1	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0016	3960	3	0	0	1	1	1	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0017	3962	3	0	0	3	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0018	3959	3	2	0	0	0	1	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0019	3962	3	0	0	3	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0020	3959	2	2	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0021	3962	2	1	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0022	3962	2	1	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0023	3972	1	0	0	1	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0024	3961	1	0	0	1	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0025	3960	1	1	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0026	3960	1	0	0	1	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0027	3962	1	0	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0028	3960	1	1	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0029	3962	1	0	0	0	0	1	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0030	3964	1	0	1	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0031	3961	1	1	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0032	3962	1	1	0	0	0	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP3_chr22_32796705_32868041	0/0	t0033	3961	1	0	0	0	1	0	copy fasta	TIMP3	chr22	32796705	32868041
TIMP4_chr3_12148068_12163912	1/0	t0001	520	325	63	54	163	11	33	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	t0002	520	56	16	13	23	1	3	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/1	t0003	520	27	15	5	5	0	1	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	t0004	520	3	3	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	t0005	520	1	0	0	0	0	1	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	t0006	520	1	1	0	0	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TIMP4_chr3_12148068_12163912	0/0	t0007	520	1	0	0	1	0	0	copy fasta	TIMP4	chr3	12148068	12163912
TINAGL1_chr1_31571515_31592686	1/1	t0001	804	371	70	77	169	12	41	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0002	805	39	6	3	27	0	3	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0003	804	16	15	1	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0004	803	5	1	0	3	0	1	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0005	804	2	2	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0006	804	1	0	1	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0007	803	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0008	804	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0009	804	1	0	0	0	0	1	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0010	805	1	0	0	1	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0011	804	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAGL1_chr1_31571515_31592686	0/0	t0012	804	1	1	0	0	0	0	copy fasta	TINAGL1	chr1	31571515	31592686
TINAG_chr6_54303441_54395142	1/1	t0001	328	366	84	62	170	12	36	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	t0002	328	5	3	2	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINAG_chr6_54303441_54395142	0/0	t0003	328	2	2	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142