JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TINAG_chr6_54303441_54395142	0/0	t0004	328	1	1	0	0	0	0	copy fasta	TINAG	chr6	54303441	54395142
TINCR_chr19_5553167_5572953	1/0	t0001	3389	96	17	28	31	6	13	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0002	3387	94	2	18	62	3	9	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0003	3387	53	10	16	22	2	3	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0004	3387	51	5	7	25	1	13	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0005	3387	50	36	5	2	2	5	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0006	3387	6	6	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0007	3387	6	0	4	2	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0008	3387	5	5	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0009	3387	4	4	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0010	3387	3	3	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0011	3388	3	0	0	3	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0012	3389	3	2	1	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0013	3388	3	0	1	2	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0014	3387	2	0	1	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0015	3389	2	2	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0016	3389	2	0	0	2	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0017	3387	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0018	3387	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0019	3389	1	0	1	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0020	3387	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0021	3388	1	0	0	0	1	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0022	3387	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0023	3387	1	0	0	0	1	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0024	3387	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0025	3387	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/1	t0026	3387	1	0	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0027	3388	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0028	3389	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0029	3387	1	0	0	0	0	1	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0030	3388	1	0	0	1	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINCR_chr19_5553167_5572953	0/0	t0031	3389	1	1	0	0	0	0	copy fasta	TINCR	chr19	5553167	5572953
TINF2_chr14_24234643_24247623	1/1	t0001	446	393	88	67	176	14	46	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	t0002	446	27	4	0	23	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	t0003	446	1	1	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	t0004	446	1	0	1	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	t0005	446	1	1	0	0	0	0	copy fasta	TINF2	chr14	24234643	24247623
TINF2_chr14_24234643_24247623	0/0	t0006	446	1	0	0	1	0	0	copy fasta	TINF2	chr14	24234643	24247623
TIPARP_chr3_156669590_156711770	0/1	t0001	1888	214	61	34	89	8	21	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0002	1888	92	14	26	34	6	12	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	1/0	t0003	1888	11	0	2	5	0	3	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0004	1888	9	0	0	9	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0005	1884	7	0	1	1	0	5	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0006	1888	5	5	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0007	1888	3	0	0	3	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0008	1888	3	3	0	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0009	1888	2	1	1	0	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0010	1888	2	0	0	2	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0011	1888	1	0	0	1	0	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0012	1888	1	0	0	0	1	0	copy fasta	TIPARP	chr3	156669590	156711770