JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIPARP_chr3_156669590_156711770	0/0	t0013	1888	1	0	0	0	0	1	copy fasta	TIPARP	chr3	156669590	156711770
TIPARP_chr3_156669590_156711770	0/0	t0014	1888	1	0	0	0	1	0	copy fasta	TIPARP	chr3	156669590	156711770
TIPIN_chr15_66331191_66361685	1/0	t0001	823	317	84	55	150	6	21	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/1	t0002	823	58	1	13	22	9	12	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0003	823	18	1	3	10	0	4	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0004	822	8	3	3	0	0	2	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0005	823	8	1	2	0	3	2	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0006	823	3	1	0	0	0	2	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0007	823	2	2	0	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0008	823	1	1	0	0	0	0	copy fasta	TIPIN	chr15	66331191	66361685
TIPIN_chr15_66331191_66361685	0/0	t0009	823	1	0	0	0	0	1	copy fasta	TIPIN	chr15	66331191	66361685
TIPRL_chr1_168173962_168207109	1/0	t0001	2180	83	2	9	55	4	12	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0002	2168	69	6	18	41	1	3	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0003	2174	35	11	1	18	1	4	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0004	2184	28	0	7	15	0	6	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0005	2171	16	10	3	0	1	2	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/1	t0006	2188	16	1	1	9	1	3	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0007	2170	10	6	1	3	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0008	2183	9	9	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0009	2172	9	7	2	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0010	2182	9	0	0	8	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0011	2172	8	5	0	3	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0012	2175	6	0	4	1	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0013	2175	5	0	0	5	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0014	2169	5	5	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0015	2186	5	0	2	2	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0016	2175	4	4	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0017	2176	4	1	2	0	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0018	2190	4	0	1	3	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0019	2179	3	3	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0020	2169	3	3	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0021	2181	2	2	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0022	2177	2	0	1	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0023	2173	2	2	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0024	2172	2	0	2	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0025	2172	2	2	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0026	2173	2	1	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0027	2178	2	0	2	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0028	2184	2	1	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0029	2186	2	0	0	2	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0030	2184	2	0	0	2	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0031	2180	2	0	0	2	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0032	2178	2	0	0	1	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0033	2184	2	0	0	1	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0034	2178	2	0	0	2	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0035	2173	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0036	2172	1	0	0	0	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0037	2175	1	0	0	0	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0038	2177	1	1	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0039	2171	1	1	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109