JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIPRL_chr1_168173962_168207109	0/0	t0040	2172	1	1	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0041	2176	1	1	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0042	2160	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0043	2172	1	0	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0044	2180	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0045	2168	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0046	2176	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0047	2186	1	0	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0048	2182	1	0	0	0	1	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0049	2182	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0050	2188	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0051	2190	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0052	2172	1	0	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0053	2182	1	1	0	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0054	2194	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0055	2180	1	0	1	0	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0056	2180	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0057	2180	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0058	2175	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0059	2174	1	0	0	0	0	1	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0060	2180	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIPRL_chr1_168173962_168207109	0/0	t0061	2182	1	0	0	1	0	0	copy fasta	TIPRL	chr1	168173962	168207109
TIRAP_chr11_126278093_126299933	0/1	t0001	1524	189	19	35	97	9	28	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0002	1524	43	6	7	26	0	4	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0003	1524	40	34	3	1	0	2	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0004	1524	33	3	12	11	2	5	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	1/0	t0005	1524	23	4	13	0	3	2	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0006	1524	9	9	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0007	1524	4	1	0	3	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0008	1524	4	0	0	4	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0009	1524	3	0	1	0	0	2	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0010	1524	3	3	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0011	1524	2	0	0	2	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0012	1524	2	2	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0013	1524	2	2	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0014	1524	1	1	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0015	1524	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0016	1524	1	0	0	1	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0017	1524	1	0	0	0	0	1	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0018	1524	1	1	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0019	1524	1	1	0	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TIRAP_chr11_126278093_126299933	0/0	t0020	1524	1	0	1	0	0	0	copy fasta	TIRAP	chr11	126278093	126299933
TJAP1_chr6_43472570_43511554	1/1	t0001	1026	224	67	45	69	8	33	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0002	1026	14	0	4	3	3	4	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0003	1026	7	0	6	0	1	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0004	1026	7	0	1	1	2	3	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0005	1026	6	6	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0006	1026	5	4	1	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0007	1026	4	4	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0008	1026	4	0	0	4	0	0	copy fasta	TJAP1	chr6	43472570	43511554