JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TJAP1_chr6_43472570_43511554	0/0	t0009	1026	3	3	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0010	1026	2	2	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0011	1026	2	0	2	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0012	1026	2	2	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0013	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0014	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0015	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0016	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0017	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0018	1026	1	1	0	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0019	1026	1	0	1	0	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJAP1_chr6_43472570_43511554	0/0	t0020	1026	1	0	0	1	0	0	copy fasta	TJAP1	chr6	43472570	43511554
TJP1_chr15_29695152_29827468	0/0	t0001	1884	126	36	28	45	4	13	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0002	1885	85	12	20	37	2	14	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0003	1885	16	0	2	5	4	5	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0004	1884	12	10	2	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/1	t0005	1884	8	6	0	0	0	1	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0006	1884	5	5	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0007	1884	2	2	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0008	1885	1	0	0	0	0	1	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0009	1884	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0010	1884	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0011	1885	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0012	1885	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0013	1884	1	0	0	1	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP1_chr15_29695152_29827468	0/0	t0014	1884	1	1	0	0	0	0	copy fasta	TJP1	chr15	29695152	29827468
TJP2_chr9_69169277_69260208	0/1	t0001	931	164	15	31	90	7	20	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	1/0	t0002	931	154	55	17	56	5	20	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0003	931	11	1	5	0	4	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0004	931	9	8	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0005	931	7	6	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0006	931	5	4	1	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0007	931	3	0	2	0	0	1	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0008	931	2	2	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP2_chr9_69169277_69260208	0/0	t0009	931	1	1	0	0	0	0	copy fasta	TJP2	chr9	69169277	69260208
TJP3_chr19_3703384_3755813	0/0	t0001	317	203	23	40	105	10	25	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	t0002	317	107	23	13	59	1	11	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	1/0	t0003	317	44	23	12	0	3	5	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/1	t0004	317	41	23	9	0	4	4	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	t0005	317	1	0	0	0	0	1	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	t0006	317	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TJP3_chr19_3703384_3755813	0/0	t0007	317	1	1	0	0	0	0	copy fasta	TJP3	chr19	3703384	3755813
TK1_chr17_78169091_78192052	1/1	t0001	727	160	32	26	73	8	19	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0002	727	158	30	26	86	1	15	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0003	727	124	32	31	38	8	15	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0004	727	1	0	0	0	1	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0005	727	1	0	0	0	0	1	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0006	727	1	0	0	1	0	0	copy fasta	TK1	chr17	78169091	78192052
TK1_chr17_78169091_78192052	0/0	t0007	727	1	0	1	0	0	0	copy fasta	TK1	chr17	78169091	78192052
TK2_chr16_66503003_66555122	1/1	t0001	4027	100	25	23	36	3	11	copy fasta	TK2	chr16	66503003	66555122