JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRI3BP_chr12_124988645_125036231	0/0	t0042	5942	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0043	5949	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0044	5945	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0045	5951	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0046	5948	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0047	5949	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0048	5948	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0049	5949	1	0	0	0	0	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0050	5944	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0051	5942	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0052	5944	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0053	5945	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0054	5944	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0055	5943	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0056	5941	1	0	0	0	1	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0057	5943	1	0	0	0	0	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0058	5943	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0059	5943	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0060	5940	1	0	0	0	0	1	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0061	5942	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0062	5944	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0063	5942	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0064	5945	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0065	5947	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0066	5946	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0067	5945	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0068	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0069	5944	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0070	5950	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0071	5949	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0072	5951	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0073	5949	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0074	5944	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0075	5945	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0076	5949	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0077	5947	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0078	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0079	5947	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0080	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0081	5951	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0082	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0083	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0084	5948	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0085	5947	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0086	5948	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0087	5946	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0088	5947	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0089	5946	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0090	5947	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0091	5947	1	0	0	0	1	0	copy fasta	BRI3BP	chr12	124988645	125036231