JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TK2_chr16_66503003_66555122	0/0	t0002	4027	63	27	9	20	0	7	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0003	4026	46	2	12	28	2	2	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0004	4029	19	1	2	15	0	1	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0005	4029	11	0	0	7	0	4	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0006	4027	7	5	2	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0007	4027	7	0	5	2	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0008	4027	6	6	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0009	4029	5	5	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0010	4028	4	1	0	3	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0011	4026	2	1	0	0	0	1	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0012	4028	2	1	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0013	4029	2	0	0	2	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0014	4026	2	0	0	0	0	2	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0015	4027	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0016	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0017	4029	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0018	4027	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0019	4026	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0020	4026	1	0	0	0	0	1	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0021	4027	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0022	4027	1	0	0	0	0	1	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0023	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0024	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0025	4027	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0026	4026	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0027	4026	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0028	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0029	4026	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0030	4029	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0031	4027	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0032	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0033	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0034	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0035	4028	1	0	1	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0036	4029	1	0	0	0	1	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0037	4029	1	0	0	1	0	0	copy fasta	TK2	chr16	66503003	66555122
TK2_chr16_66503003_66555122	0/0	t0038	4027	1	1	0	0	0	0	copy fasta	TK2	chr16	66503003	66555122
TKFC_chr11_61328228_61354242	0/1	t0001	2946	131	22	33	48	10	17	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0002	2951	22	15	0	6	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0003	2951	10	8	0	0	0	2	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0004	2952	9	8	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0005	2941	9	9	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0006	2927	7	0	2	5	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0007	2951	6	6	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	1/0	t0008	2951	6	4	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0009	2952	4	0	0	3	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0010	2951	4	3	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0011	2951	4	4	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0012	2951	3	2	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0013	2951	2	2	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242