JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TKFC_chr11_61328228_61354242	0/0	t0014	2946	2	0	0	0	0	2	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0015	2951	2	2	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0016	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0017	2951	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0018	2952	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0019	2946	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0020	2952	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0021	2951	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0022	2946	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0023	2946	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0024	2946	1	0	1	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0025	2951	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0026	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0027	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0028	2941	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0029	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0030	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0031	2946	1	0	0	0	0	1	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0032	2951	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0033	2952	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0034	2941	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0035	2941	1	1	0	0	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKFC_chr11_61328228_61354242	0/0	t0036	2946	1	0	0	1	0	0	copy fasta	TKFC	chr11	61328228	61354242
TKTL1_chrX_154290795_154335350	1/1	t0001	728	160	35	30	74	6	13	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0002	728	83	23	21	27	1	11	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0003	728	11	11	0	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0004	728	5	4	1	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0005	728	3	0	1	2	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0006	728	1	0	1	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0007	728	1	1	0	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0008	729	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0009	728	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0010	727	1	1	0	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0011	729	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0012	727	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0013	728	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0014	727	1	0	0	1	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL1_chrX_154290795_154335350	0/0	t0015	728	1	1	0	0	0	0	copy fasta	TKTL1	chrX	154290795	154335350
TKTL2_chr4_163466095_163478754	1/1	t0001	780	428	92	68	210	14	42	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	t0002	780	4	4	0	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	t0003	780	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	t0004	780	1	0	0	1	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	t0005	780	1	0	1	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKTL2_chr4_163466095_163478754	0/0	t0006	780	1	0	1	0	0	0	copy fasta	TKTL2	chr4	163466095	163478754
TKT_chr3_53219712_53261022	1/0	t0001	1125	241	69	33	116	4	18	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/1	t0002	1116	62	10	15	25	3	8	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0003	1125	34	1	16	7	3	7	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0004	1125	16	2	7	0	6	1	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0005	1116	14	0	0	5	0	9	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0006	1125	3	2	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022