JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TKT_chr3_53219712_53261022	0/0	t0007	1125	2	0	0	2	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0008	1125	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0009	1116	1	0	0	0	0	1	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0010	1116	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0011	1125	1	0	0	1	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0012	1125	1	1	0	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TKT_chr3_53219712_53261022	0/0	t0013	1125	1	0	1	0	0	0	copy fasta	TKT	chr3	53219712	53261022
TLCD1_chr17_28719348_28731233	1/1	t0001	299	299	73	63	108	11	42	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	t0002	299	51	13	7	26	1	4	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	t0003	298	3	0	0	3	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	t0004	299	2	0	0	2	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD1_chr17_28719348_28731233	0/0	t0005	299	1	0	0	1	0	0	copy fasta	TLCD1	chr17	28719348	28731233
TLCD2_chr17_1697816_1715377	0/0	t0001	5092	77	2	28	26	8	13	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0002	5093	55	0	1	51	0	3	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0003	5394	37	5	7	21	1	3	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0004	5091	33	4	2	26	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0005	5089	32	9	1	17	0	5	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0006	5090	24	5	10	1	5	3	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0007	5089	12	9	2	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0008	5093	11	2	0	8	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0009	5388	10	0	8	0	0	2	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0010	5090	9	9	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0011	5093	8	8	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0012	5093	7	0	5	0	0	2	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0013	5395	6	0	2	3	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0014	5093	5	5	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0015	5093	5	0	0	5	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0016	5093	4	4	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0017	5093	4	0	1	3	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0018	5089	4	4	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0019	5090	4	0	0	3	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0020	5090	3	3	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0021	5091	3	0	0	2	1	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0022	5093	3	0	1	0	2	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0023	5092	3	0	0	2	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0024	5094	3	1	0	1	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0025	5089	3	2	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0026	5090	3	1	0	1	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0027	5091	3	3	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0028	5094	2	1	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0029	5091	2	0	0	1	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0030	5394	2	0	0	2	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0031	5090	2	0	1	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0032	5094	2	0	0	2	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0033	5092	2	0	0	1	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0034	5092	2	0	0	0	0	2	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0035	5389	2	0	1	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0036	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0037	5089	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0038	5089	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377