JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLCD2_chr17_1697816_1715377	0/0	t0039	5091	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0040	5089	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0041	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0042	5090	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0043	5392	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0044	5395	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0045	5395	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0046	5393	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0047	5090	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0048	5089	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0049	5091	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0050	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0051	5087	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0052	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0053	3799	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0054	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0055	5091	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0056	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0057	5090	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0058	5091	1	0	0	0	1	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0059	5403	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0060	5092	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0061	5088	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0062	5089	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/1	t0063	5094	1	0	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0064	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0065	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0066	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0067	5091	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0068	5091	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0069	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0070	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0071	5093	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0072	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0073	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0074	5088	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0075	5089	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0076	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0077	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0078	5090	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0079	5090	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0080	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0081	5091	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0082	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0083	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0084	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0085	5090	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0086	5089	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0087	5092	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0088	5089	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377