JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLCD2_chr17_1697816_1715377	0/0	t0089	5094	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0090	5094	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0091	5090	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0092	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0093	5091	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0094	5093	1	0	0	0	0	1	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0095	5091	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0096	5093	1	0	0	1	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0097	5388	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0098	5389	1	0	1	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD2_chr17_1697816_1715377	0/0	t0099	5093	1	1	0	0	0	0	copy fasta	TLCD2	chr17	1697816	1715377
TLCD3A_chr17_727596_747968	1/0	t0001	1451	272	42	40	142	12	35	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/1	t0002	1451	67	5	22	30	2	7	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0003	1451	11	5	2	0	1	3	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0004	1451	9	0	0	8	0	1	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0005	1451	7	6	1	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0006	1451	7	0	4	0	2	1	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0007	1451	4	4	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0008	1451	3	0	0	3	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0009	1451	3	0	1	0	1	1	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0010	1451	2	2	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0011	1451	2	0	0	2	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0012	1451	1	0	1	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0013	1451	1	0	1	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0014	1451	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0015	1451	1	0	1	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0016	1451	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0017	1451	1	0	0	1	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0018	1451	1	0	1	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0019	1451	1	1	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3A_chr17_727596_747968	0/0	t0020	1451	1	1	0	0	0	0	copy fasta	TLCD3A	chr17	727596	747968
TLCD3B_chr16_30019427_30036271	1/0	t0001	1501	169	21	45	83	3	16	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/1	t0002	1501	149	43	18	66	3	18	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0003	1501	20	12	4	0	4	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0004	1501	4	0	2	0	2	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0005	1501	2	2	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0006	1501	2	0	2	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0007	1501	1	0	0	1	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0008	1501	1	1	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0009	1501	1	0	1	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD3B_chr16_30019427_30036271	0/0	t0010	1501	1	1	0	0	0	0	copy fasta	TLCD3B	chr16	30019427	30036271
TLCD4_chr1_95112355_95202607	0/0	t0001	6012	147	27	20	93	1	6	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/1	t0002	6013	69	13	21	22	2	10	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0003	6014	30	0	7	23	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0004	6014	19	0	0	16	0	3	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0005	6014	18	9	5	0	0	4	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0006	6014	11	9	2	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0007	6014	11	0	3	6	1	1	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0008	6013	11	2	4	0	3	2	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0009	6014	6	6	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607