JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLCD4_chr1_95112355_95202607	0/0	t0010	6013	4	1	1	0	1	1	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0011	6009	4	0	4	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0012	6012	4	4	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0013	6014	3	0	1	0	0	2	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0014	6013	3	3	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0015	6012	3	3	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0016	6014	2	0	2	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0017	6013	2	0	0	2	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0018	6014	2	2	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0019	6014	2	0	2	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0020	6012	2	2	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0021	6013	2	0	0	0	0	2	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0022	6012	2	0	2	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0023	6014	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0024	6014	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0025	6014	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0026	6014	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0027	6014	1	0	1	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0028	6014	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0029	6013	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0030	6013	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0031	6013	1	0	1	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0032	6012	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0033	6012	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0034	6012	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0035	6012	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0036	6012	1	0	0	0	0	1	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0037	6013	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0038	6012	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0039	6013	1	0	0	1	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0040	6014	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0041	6014	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	0/0	t0042	6012	1	1	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD4_chr1_95112355_95202607	1/0	t0043	6014	1	0	0	0	0	0	copy fasta	TLCD4	chr1	95112355	95202607
TLCD5_chr11_120320299_120338686	1/0	t0001	3242	180	30	21	113	2	13	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0002	3242	118	36	26	35	7	14	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/1	t0003	3242	37	5	16	2	7	6	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0004	3242	19	0	0	9	0	10	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0005	3242	16	0	9	7	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0006	3241	7	4	1	2	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0007	3243	6	5	0	0	1	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0008	3241	5	0	2	3	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0009	3242	5	0	3	2	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0010	3242	5	0	0	5	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0011	3242	4	4	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0012	3242	2	2	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0013	3243	2	2	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0014	3245	2	1	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0015	3241	2	2	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0016	3245	2	0	0	2	0	0	copy fasta	TLCD5	chr11	120320299	120338686