JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLCD5_chr11_120320299_120338686	0/0	t0017	3241	2	0	0	2	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0018	3242	2	0	1	0	1	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0019	3242	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0020	3242	1	0	0	1	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0021	3242	1	0	0	1	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0022	3242	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0023	3242	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0024	3242	1	0	0	0	0	1	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0025	3241	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0026	3245	1	0	0	0	0	1	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0027	3242	1	0	0	1	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0028	3242	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0029	3242	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0030	3242	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0031	3242	1	0	0	0	0	1	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0032	3243	1	1	0	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0033	3242	1	0	0	1	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLCD5_chr11_120320299_120338686	0/0	t0034	3242	1	0	1	0	0	0	copy fasta	TLCD5	chr11	120320299	120338686
TLDC2_chr20_36871138_36899235	1/1	t0001	1429	367	83	70	154	16	42	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0002	1429	4	4	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0003	1429	4	4	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0004	1429	2	0	0	0	0	2	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0005	1429	1	0	1	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0006	1429	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0007	1429	1	0	1	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0008	1429	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0009	1429	1	1	0	0	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0010	1429	1	0	0	1	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLDC2_chr20_36871138_36899235	0/0	t0011	1429	1	0	0	1	0	0	copy fasta	TLDC2	chr20	36871138	36899235
TLE1_chr9_81578683_81694547	1/0	t0001	1823	208	50	27	102	8	20	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/1	t0002	1823	57	10	17	16	5	8	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0003	1823	49	9	10	23	2	5	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0004	1823	6	6	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0005	1823	5	0	2	2	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0006	1823	4	4	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0007	1823	3	3	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0008	1823	3	2	1	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0009	1823	2	2	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0010	1823	2	0	1	0	1	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0011	1823	2	0	1	0	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0012	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0013	1823	1	0	0	1	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0014	1823	1	0	0	1	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0015	1823	1	0	0	0	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0016	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0017	1823	1	0	0	0	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0018	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0019	1823	1	0	1	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0020	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0021	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547