JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLE1_chr9_81578683_81694547	0/0	t0022	1823	1	0	0	0	0	1	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0023	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0024	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0025	1823	1	0	0	1	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE1_chr9_81578683_81694547	0/0	t0026	1823	1	1	0	0	0	0	copy fasta	TLE1	chr9	81578683	81694547
TLE2_chr19_2992644_3034280	1/1	t0001	581	347	50	72	165	18	40	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0002	581	35	29	5	0	0	1	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0003	581	7	0	5	1	0	1	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0004	581	5	5	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0005	581	2	2	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0006	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0007	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0008	581	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0009	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0010	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0011	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0012	581	1	1	0	0	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE2_chr19_2992644_3034280	0/0	t0013	581	1	0	0	1	0	0	copy fasta	TLE2	chr19	2992644	3034280
TLE3_chr15_70042790_70102917	0/1	t0001	3427	49	2	9	30	1	6	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0002	3425	43	4	4	30	3	2	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0003	3427	23	2	7	10	1	3	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0004	3426	20	2	0	11	4	3	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0005	3427	13	0	1	12	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0006	3425	12	2	1	7	0	2	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0007	3426	10	5	0	4	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0008	3427	10	1	2	5	1	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0009	3425	8	1	1	5	1	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0010	3429	8	0	3	3	1	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0011	3425	7	0	4	0	0	3	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0012	3424	6	0	1	3	1	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0013	3426	5	0	3	0	0	2	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0014	3428	5	0	2	1	1	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0015	3427	4	0	0	4	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0016	3426	4	0	0	4	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0017	3426	4	4	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0018	3427	4	2	1	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0019	3426	4	3	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0020	3427	4	0	1	3	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0021	3429	4	0	1	2	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0022	3424	3	3	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0023	3425	3	1	0	2	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0024	3425	3	0	3	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0025	3425	3	2	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0026	3426	3	0	0	2	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0027	3429	3	3	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0028	3429	2	2	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0029	3427	2	0	1	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0030	3429	2	2	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0031	3426	2	2	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0032	3425	2	0	0	1	0	1	copy fasta	TLE3	chr15	70042790	70102917