JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLE3_chr15_70042790_70102917	0/0	t0083	3425	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0084	3425	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0085	3426	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0086	3426	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0087	3427	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0088	3425	1	0	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0089	3427	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0090	3426	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0091	3427	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0092	3427	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0093	3428	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0094	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0095	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0096	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0097	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0098	3428	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0099	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0100	3369	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0101	3426	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0102	3427	1	0	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0103	3425	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0104	3425	1	0	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0105	3427	1	0	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0106	3425	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0107	3425	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0108	3425	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0109	3425	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0110	3425	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0111	3426	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0112	3429	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0113	3426	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0114	3426	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0115	3428	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0116	3427	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0117	3428	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0118	3428	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0119	3427	1	0	1	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0120	3429	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0121	3428	1	0	0	0	0	1	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0122	3428	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	1/0	t0123	3427	1	0	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0124	3428	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0125	3430	1	1	0	0	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE3_chr15_70042790_70102917	0/0	t0126	3427	1	0	0	1	0	0	copy fasta	TLE3	chr15	70042790	70102917
TLE4_chr9_79566965_79731882	0/1	t0001	2560	87	11	21	40	4	10	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0002	2565	82	22	17	32	4	7	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0003	2560	59	34	6	13	2	4	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0004	2557	9	7	2	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0005	2565	3	0	0	3	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0006	2565	2	0	2	0	0	0	copy fasta	TLE4	chr9	79566965	79731882