Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRI3BP_chr12_124988645_125036231	0/0	t0092	5947	1	1	0	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0093	5946	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0094	5942	1	0	0	0	1	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0095	5949	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0096	5947	1	0	0	0	1	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0097	5944	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0098	5948	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0099	5947	1	0	1	0	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3BP_chr12_124988645_125036231	0/0	t0100	5947	1	0	0	1	0	0	copy fasta	BRI3BP	chr12	124988645	125036231
BRI3_chr7_98276686_98296545	0/1	t0001	413	249	50	39	129	10	20	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	1/0	t0002	413	101	16	16	53	1	14	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0003	413	51	25	6	9	0	11	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0004	393	7	0	7	0	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0005	413	3	3	0	0	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0006	393	1	0	0	0	0	1	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0007	413	1	0	0	1	0	0	copy fasta	BRI3	chr7	98276686	98296545
BRI3_chr7_98276686_98296545	0/0	t0008	413	1	0	0	0	1	0	copy fasta	BRI3	chr7	98276686	98296545
BRICD5_chr16_2204253_2215863	1/1	t0001	140	434	98	84	186	18	46	copy fasta	BRICD5	chr16	2204253	2215863
BRINP1_chr9_119161629_119374435	0/1	t0001	886	198	59	50	52	11	25	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0002	886	17	16	1	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0003	886	12	1	9	0	1	1	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0004	886	3	0	0	3	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0005	886	2	0	0	2	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0006	886	1	0	0	1	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	1/0	t0007	886	1	0	0	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0008	886	1	1	0	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP1_chr9_119161629_119374435	0/0	t0009	916	1	1	0	0	0	0	copy fasta	BRINP1	chr9	119161629	119374435
BRINP2_chr1_177165958_177287422	1/1	t0001	1746	152	32	24	75	4	15	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0002	1748	42	9	4	23	2	4	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0003	1746	20	7	8	0	1	4	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0004	1746	14	10	4	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0005	1746	8	0	8	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0006	1746	2	0	1	0	1	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0007	1746	2	0	0	1	0	1	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0008	1746	2	0	0	2	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0009	1748	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0010	1748	1	0	1	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0011	1748	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0012	1746	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0013	1746	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0014	1748	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0015	1748	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0016	1746	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0017	1746	1	0	0	1	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP2_chr1_177165958_177287422	0/0	t0018	1746	1	1	0	0	0	0	copy fasta	BRINP2	chr1	177165958	177287422
BRINP3_chr1_190092658_190482864	1/1	t0001	828	189	59	32	69	5	22	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0002	828	38	14	4	14	1	5	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0003	827	6	4	0	0	0	2	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0004	828	1	0	0	1	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0005	827	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864