JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLE4_chr9_79566965_79731882	1/0	t0007	2565	2	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0008	2560	2	1	1	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0009	2560	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0010	2560	1	0	0	0	0	1	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0011	2560	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0012	2560	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0013	2565	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0014	2561	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0015	2560	1	0	1	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0016	2560	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0017	2560	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0018	2560	1	0	0	1	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0019	2560	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE4_chr9_79566965_79731882	0/0	t0020	2560	1	1	0	0	0	0	copy fasta	TLE4	chr9	79566965	79731882
TLE5_chr19_3047910_3067495	0/0	t0001	1205	192	71	23	71	9	18	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	1/0	t0002	1205	149	7	37	82	2	20	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0003	1205	39	8	14	4	5	8	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0004	1205	8	0	1	7	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/1	t0005	1205	4	0	1	0	2	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0006	1205	3	3	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0007	1205	2	2	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0008	1205	2	0	0	2	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0009	1205	2	0	0	0	0	2	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0010	1205	1	1	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0011	1205	1	0	1	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0012	1205	1	1	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0013	1205	1	0	1	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0014	1205	1	0	0	1	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0015	1205	1	1	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0016	1205	1	1	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0017	1205	1	0	0	1	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE5_chr19_3047910_3067495	0/0	t0018	1205	1	1	0	0	0	0	copy fasta	TLE5	chr19	3047910	3067495
TLE6_chr19_2972564_3000179	1/0	t0001	259	118	22	20	52	7	16	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/1	t0002	261	96	23	18	47	2	5	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0003	260	73	13	11	32	3	14	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0004	262	39	10	11	16	0	2	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0005	258	23	5	6	10	1	1	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0006	257	20	20	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0007	259	11	0	5	3	3	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0008	260	11	0	4	3	0	4	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0009	258	6	0	0	6	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0010	257	4	4	0	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0011	258	4	1	3	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0012	259	2	0	0	1	0	1	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0013	261	2	0	2	0	0	0	copy fasta	TLE6	chr19	2972564	3000179
TLE6_chr19_2972564_3000179	0/0	t0014	262	1	0	0	0	0	1	copy fasta	TLE6	chr19	2972564	3000179
TLE7_chr16_71424980_71447054	1/0	t0001	465	378	72	73	178	15	39	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/1	t0002	465	31	21	7	0	1	1	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	t0003	465	2	0	0	2	0	0	copy fasta	TLE7	chr16	71424980	71447054
TLE7_chr16_71424980_71447054	0/0	t0004	465	1	1	0	0	0	0	copy fasta	TLE7	chr16	71424980	71447054