JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLK1_chr2_170985823_171165893	0/0	t0001	3424	63	11	15	31	2	4	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0002	3428	47	8	9	27	0	3	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0003	3417	27	2	10	13	2	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/1	t0004	3416	18	15	1	0	1	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0005	3425	9	9	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	1/0	t0006	3423	8	7	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0007	3423	8	0	2	5	0	1	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0008	3429	7	0	0	5	0	2	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0009	3425	7	0	0	3	2	2	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0010	3417	6	0	3	0	0	3	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0011	3425	6	3	0	3	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0012	3425	5	4	1	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0013	3426	3	3	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0014	3427	3	0	0	3	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0015	3420	3	0	2	1	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0016	3427	3	3	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0017	3425	3	3	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0018	3427	2	0	0	1	0	1	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0019	3406	2	0	1	0	1	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0020	3423	2	2	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0021	3424	2	2	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0022	3424	2	2	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0023	3423	2	0	2	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0024	3423	2	2	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0025	3425	2	2	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0026	3423	2	1	1	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0027	3423	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0028	3440	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0029	3417	1	0	0	1	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0030	3443	1	0	0	1	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0031	3428	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0032	3428	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0033	3416	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0034	3420	1	0	1	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0035	3422	1	0	1	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0036	3423	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0037	3422	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0038	3420	1	0	1	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0039	3424	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0040	3425	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0041	3424	1	0	0	1	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0042	3425	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0043	3426	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0044	3417	1	0	0	1	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0045	3425	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0046	3424	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0047	3417	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK1_chr2_170985823_171165893	0/0	t0048	3425	1	1	0	0	0	0	copy fasta	TLK1	chr2	170985823	171165893
TLK2_chr17_62473825_62620481	1/0	t0001	3388	97	28	20	33	6	9	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/1	t0002	3388	76	8	17	32	5	13	copy fasta	TLK2	chr17	62473825	62620481