JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLK2_chr17_62473825_62620481	0/0	t0003	3387	44	11	8	18	0	7	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0004	3388	17	10	4	2	0	1	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0005	3389	6	1	3	2	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0006	3388	5	5	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0007	3387	5	1	2	1	1	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0008	3388	4	1	2	0	0	1	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0009	3387	4	4	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0010	3388	4	4	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0011	3388	4	0	0	4	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0012	3388	3	0	3	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0013	3388	3	0	0	3	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0014	3389	2	1	0	0	0	1	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0015	3389	2	1	1	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0016	3388	2	0	2	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0017	3389	2	1	1	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0018	3389	2	1	0	1	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0019	3389	1	0	1	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0020	3388	1	0	0	1	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0021	3388	1	0	1	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0022	3389	1	1	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0023	3389	1	0	0	1	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0024	3389	1	0	0	1	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0025	3388	1	0	0	1	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0026	3387	1	1	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0027	3387	1	1	0	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLK2_chr17_62473825_62620481	0/0	t0028	3388	1	0	1	0	0	0	copy fasta	TLK2	chr17	62473825	62620481
TLL1_chr4_165868237_166109457	0/0	t0001	4251	49	5	10	23	4	7	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/1	t0002	4252	19	8	7	1	0	2	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0003	4251	15	2	0	12	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0004	4251	14	3	1	7	0	3	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0005	4251	10	0	0	10	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0006	4251	9	0	0	7	1	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0007	4251	7	0	0	6	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0008	4251	7	1	0	5	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0009	4252	7	2	1	3	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0010	4251	7	0	0	6	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0011	4251	5	2	2	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0012	4251	5	0	0	5	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0013	4251	5	0	0	5	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0014	4250	4	4	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0015	4250	4	3	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0016	4251	4	4	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0017	4251	3	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0018	4251	3	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0019	4252	3	3	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0020	4252	3	0	3	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0021	4251	3	0	1	0	0	2	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0022	4251	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0023	4250	2	2	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0024	4251	2	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457