JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
TLL1_chr4_165868237_166109457	0/0	t0025	4252	2	1	0	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0026	4250	2	2	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0027	4251	2	2	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0028	4252	2	0	1	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0029	4251	2	2	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0030	4252	2	0	1	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0031	4252	2	2	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0032	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0033	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0034	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0035	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0036	4251	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0037	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0038	4251	1	0	0	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0039	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0040	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0041	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0042	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0043	4251	1	0	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0044	4252	1	0	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0045	4252	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0046	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0047	4250	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0048	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0049	4252	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0050	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0051	4252	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0052	4250	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0053	4251	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0054	4251	1	0	0	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0055	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0056	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	1/0	t0057	4250	1	0	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0058	4250	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0059	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0060	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0061	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0062	4249	1	0	0	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0063	4251	1	0	1	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0064	4252	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0065	4251	1	0	0	0	1	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0066	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0067	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0068	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0069	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0070	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0071	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0072	4252	1	0	0	1	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0073	4251	1	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL1_chr4_165868237_166109457	0/0	t0074	4251	1	0	0	0	1	copy fasta	TLL1	chr4	165868237	166109457