JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLL1_chr4_165868237_166109457	0/0	t0075	4252	1	0	1	0	0	0	copy fasta	TLL1	chr4	165868237	166109457
TLL2_chr10_96359608_96518926	0/1	t0001	3722	85	11	31	27	4	11	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0002	3722	43	1	2	36	0	4	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0003	3722	25	19	2	0	0	4	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0004	3722	22	1	4	8	0	9	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0005	3722	14	6	5	0	2	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0006	3722	8	0	0	8	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0007	3721	5	0	1	0	0	4	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0008	3722	4	3	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0009	3721	4	3	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0010	3722	4	4	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0011	3721	3	3	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0012	3722	2	0	1	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0013	3722	2	0	0	0	0	2	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0014	3721	2	2	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0015	3722	2	2	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	1/0	t0016	3722	2	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0017	3722	2	2	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0018	3722	2	1	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0019	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0020	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0021	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0022	3722	1	0	0	1	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0023	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0024	3722	1	0	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0025	3722	1	0	0	0	1	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0026	4072	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0027	3722	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0028	3722	1	0	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0029	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0030	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0031	3722	1	0	0	1	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0032	3722	1	0	0	0	0	1	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0033	3722	1	0	0	1	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0034	3721	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0035	3721	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0036	3722	1	0	1	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0037	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0038	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0039	3721	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0040	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0041	3722	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0042	3721	1	1	0	0	0	0	copy fasta	TLL2	chr10	96359608	96518926
TLL2_chr10_96359608_96518926	0/0	t0043	3722	1	0	0	0	1	0	copy fasta	TLL2	chr10	96359608	96518926
TLN1_chr9_35691948_35737195	0/1	t0001	998	318	61	65	144	12	35	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	1/0	t0002	998	22	20	1	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0003	998	16	0	1	13	0	2	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0004	998	7	5	0	1	0	1	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0005	1006	3	0	2	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0006	998	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195