JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLN1_chr9_35691948_35737195	0/0	t0007	998	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0008	998	1	0	0	1	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0009	998	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0010	998	1	1	0	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN1_chr9_35691948_35737195	0/0	t0011	1006	1	0	1	0	0	0	copy fasta	TLN1	chr9	35691948	35737195
TLN2_chr15_62385550_62849631	1/0	t0001	4395	49	11	12	11	4	10	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0002	4407	11	0	4	5	1	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0003	4397	10	1	3	2	2	2	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0004	4399	9	9	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0005	4392	6	3	3	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0006	4398	5	5	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0007	4399	4	4	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0008	4399	4	3	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0009	4373	3	3	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0010	4398	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0011	4398	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0012	4396	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0013	4401	2	0	0	0	0	2	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0014	4399	2	0	0	2	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0015	4383	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0016	4379	2	2	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0017	4399	2	0	0	0	0	2	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0018	4372	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0019	4395	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0020	4395	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0021	4395	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0022	4399	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0023	4401	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0024	4401	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0025	4383	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0026	4394	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0027	4407	1	0	0	1	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0028	4395	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0029	4395	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0030	4399	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0031	4399	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0032	4399	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0033	4395	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0034	4395	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0035	4395	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0036	4395	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0037	4395	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0038	4405	1	0	0	0	1	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0039	4399	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0040	4399	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0041	4395	1	0	1	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0042	4398	1	1	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/1	t0043	4395	1	0	0	0	0	0	copy fasta	TLN2	chr15	62385550	62849631
TLN2_chr15_62385550_62849631	0/0	t0044	4395	1	0	0	0	0	1	copy fasta	TLN2	chr15	62385550	62849631
TLNRD1_chr15_80995923_81010788	1/1	t0001	3778	192	22	53	81	8	26	copy fasta	TLNRD1	chr15	80995923	81010788