JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLNRD1_chr15_80995923_81010788	0/0	t0002	3778	63	12	5	40	2	4	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0003	3779	19	19	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0004	3775	13	9	3	0	1	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0005	3778	11	0	0	11	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0006	3778	6	6	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0007	3777	5	0	1	0	1	3	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0008	3775	5	4	1	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0009	3778	3	3	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0010	3778	3	2	1	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0011	3779	3	3	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0012	3778	3	3	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0013	3778	2	0	0	2	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0014	3778	2	0	0	2	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0015	3778	2	0	2	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0016	3775	2	2	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0017	3778	2	2	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0018	3779	2	2	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0019	3778	2	2	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0020	3779	1	1	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0021	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0022	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0023	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0024	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0025	3778	1	0	1	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0026	3778	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0027	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0028	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0029	3778	1	1	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0030	3778	1	0	0	0	0	1	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0031	3778	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0032	3778	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0033	3778	1	0	1	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0034	3778	1	1	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0035	3778	1	0	0	1	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0036	3775	1	1	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLNRD1_chr15_80995923_81010788	0/0	t0037	3775	1	1	0	0	0	0	copy fasta	TLNRD1	chr15	80995923	81010788
TLR10_chr4_38767238_38787990	1/0	t0001	1556	159	23	45	64	8	18	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0002	1557	93	0	14	73	1	5	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/1	t0003	1557	74	24	14	30	0	5	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0004	1557	38	12	1	18	1	6	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0005	1557	12	3	1	0	2	6	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0006	1557	11	9	2	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0007	1556	10	10	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0008	1557	9	0	0	4	0	5	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0009	1556	6	0	0	6	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0010	1557	6	6	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0011	1557	4	0	0	4	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0012	1556	3	0	0	1	0	2	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0013	1556	2	2	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0014	1557	2	0	2	0	0	0	copy fasta	TLR10	chr4	38767238	38787990