JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR10_chr4_38767238_38787990	0/0	t0015	1556	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0016	1557	1	0	0	0	0	1	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0017	1557	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0018	1556	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0019	1557	1	0	0	1	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0020	1556	1	0	1	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0021	1557	1	1	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0022	1557	1	1	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR10_chr4_38767238_38787990	0/0	t0023	1556	1	1	0	0	0	0	copy fasta	TLR10	chr4	38767238	38787990
TLR1_chr4_38791255_38809791	1/0	t0001	491	301	75	62	109	12	42	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/1	t0002	491	98	0	14	77	1	5	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0003	491	24	0	1	23	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0004	491	11	9	1	0	1	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0005	491	9	8	0	0	0	1	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0006	491	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0007	491	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR1_chr4_38791255_38809791	0/0	t0008	217	1	0	0	1	0	0	copy fasta	TLR1	chr4	38791255	38809791
TLR2_chr4_153679280_153711260	1/0	t0001	1242	296	66	58	127	16	28	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/1	t0002	1219	115	26	12	66	0	10	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0003	1242	13	0	1	12	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0004	1242	2	2	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0005	1242	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0006	1242	1	0	1	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0007	1242	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0008	1242	1	0	0	1	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0009	1219	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR2_chr4_153679280_153711260	0/0	t0010	1219	1	1	0	0	0	0	copy fasta	TLR2	chr4	153679280	153711260
TLR3_chr4_186064156_186093073	0/0	t0001	3301	103	8	19	63	8	5	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0002	3301	76	9	9	47	4	7	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	1/0	t0003	3301	52	10	15	12	4	10	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/1	t0004	3301	48	5	7	30	1	4	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0005	3301	38	2	4	22	0	10	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0006	3301	15	0	0	15	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0007	3301	10	1	5	4	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0008	3301	10	9	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0009	3300	6	0	0	6	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0010	3301	5	4	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0011	3301	5	5	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0012	3301	4	4	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0013	3301	4	0	0	4	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0014	3301	4	4	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0015	3301	4	4	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0016	3301	4	0	0	0	0	4	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0017	3301	4	3	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0018	3301	3	0	0	0	0	3	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0019	3301	3	0	2	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0020	3301	3	3	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0021	3301	3	3	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0022	3301	3	3	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0023	3301	3	3	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073