JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR3_chr4_186064156_186093073	0/0	t0024	3301	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0025	3301	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0026	3301	2	0	0	0	0	2	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0027	3301	2	0	2	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0028	3301	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0029	3301	2	2	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0030	3301	2	0	2	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0031	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0032	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0033	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0034	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0035	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0036	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0037	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0038	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0039	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0040	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0041	3301	1	0	0	0	0	1	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0042	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0043	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0044	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0045	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0046	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0047	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0048	3301	1	0	0	0	1	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0049	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0050	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0051	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0052	3301	1	0	0	1	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0053	3301	1	0	1	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0054	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0055	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR3_chr4_186064156_186093073	0/0	t0056	3301	1	1	0	0	0	0	copy fasta	TLR3	chr4	186064156	186093073
TLR4_chr9_117699403_117729735	0/1	t0001	10158	94	1	19	63	2	8	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0002	10158	45	0	4	33	0	8	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	1/0	t0003	10158	45	9	17	4	6	8	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0004	10158	25	0	10	15	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0005	10158	23	1	1	13	3	5	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0006	10158	17	5	0	9	0	3	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0007	10158	14	5	4	2	1	2	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0008	10154	11	10	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0009	10158	10	10	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0010	10158	7	0	3	0	0	4	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0011	10158	7	6	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0012	10158	7	7	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0013	10158	5	3	2	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0014	10158	5	5	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0015	10158	5	4	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0016	10158	5	5	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0017	10158	3	0	2	1	0	0	copy fasta	TLR4	chr9	117699403	117729735