JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR4_chr9_117699403_117729735	0/0	t0018	10162	3	0	1	0	2	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0019	10158	3	0	3	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0020	10158	3	0	0	3	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0021	10158	3	3	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0022	10158	3	3	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0023	10158	3	3	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0024	10162	2	2	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0025	10158	2	0	0	2	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0026	10162	2	0	0	2	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0027	10158	2	0	2	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0028	10158	2	0	1	0	1	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0029	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0030	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0031	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0032	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0033	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0034	10158	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0035	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0036	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0037	10158	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0038	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0039	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0040	10158	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0041	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0042	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0043	10158	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0044	10162	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0045	10162	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0046	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0047	10154	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0048	10162	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0049	10158	1	0	0	1	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0050	10158	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0051	10158	1	0	0	0	1	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0052	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0053	10154	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0054	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0055	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0056	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0057	10158	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0058	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0059	10158	1	0	0	0	0	1	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0060	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0061	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0062	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0063	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0064	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0065	10158	1	1	0	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR4_chr9_117699403_117729735	0/0	t0066	10158	1	0	1	0	0	0	copy fasta	TLR4	chr9	117699403	117729735
TLR5_chr1_223104404_223148248	1/1	t0001	1659	236	48	51	104	11	20	copy fasta	TLR5	chr1	223104404	223148248