Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRINP3_chr1_190092658_190482864	0/0	t0006	828	1	0	0	1	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0007	828	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0008	828	1	1	0	0	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0009	828	1	0	0	0	0	1	copy fasta	BRINP3	chr1	190092658	190482864
BRINP3_chr1_190092658_190482864	0/0	t0010	828	1	0	0	1	0	0	copy fasta	BRINP3	chr1	190092658	190482864
BRIP1_chr17_61674139_61868528	0/0	t0001	4439	36	1	8	20	1	6	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0002	4432	33	3	6	23	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	1/0	t0003	4433	23	7	7	3	0	5	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0004	4432	21	3	7	5	2	4	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0005	4440	16	0	2	9	1	4	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0006	4439	16	5	6	4	1	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0007	4434	12	0	0	12	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0008	4434	8	7	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0009	4434	5	0	0	3	0	2	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0010	4433	5	1	0	1	0	3	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0011	4433	4	0	0	3	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0012	4439	4	1	0	0	0	3	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0013	4441	4	0	1	0	2	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0014	4441	4	0	1	1	0	2	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0015	4432	4	4	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0016	4433	4	4	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0017	4433	3	3	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0018	4440	3	1	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0019	4440	3	0	0	3	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0020	4439	3	3	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0021	4435	3	0	0	2	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0022	4433	3	3	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0023	4432	2	0	0	1	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0024	4428	2	0	0	1	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0025	4440	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0026	4433	2	0	0	2	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0027	4433	2	1	0	0	1	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0028	4440	2	0	1	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0029	4439	2	2	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0030	4433	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0031	4433	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0032	4434	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0033	4433	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0034	4428	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0035	4439	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0036	4441	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0037	4439	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0038	4440	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0039	4442	1	0	0	0	0	1	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0040	4440	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0041	4434	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0042	4433	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0043	4440	1	0	0	1	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0044	4446	1	1	0	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528
BRIP1_chr17_61674139_61868528	0/0	t0045	4432	1	0	1	0	0	0	copy fasta	BRIP1	chr17	61674139	61868528