JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR5_chr1_223104404_223148248	0/0	t0002	1660	65	3	18	24	3	17	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0003	1668	16	3	0	13	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0004	1667	7	7	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0005	1667	7	1	0	6	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0006	1668	4	1	1	0	1	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0007	1667	3	3	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0008	1667	3	3	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0009	1659	2	0	0	0	0	2	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0010	1659	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0011	1659	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0012	1659	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0013	1667	2	2	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0014	1659	2	1	0	0	1	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0015	1660	1	0	0	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0016	1667	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0017	1660	1	0	0	0	0	1	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0018	1660	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0019	1659	1	0	1	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0020	1659	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0021	1659	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0022	1659	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0023	1660	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0024	1659	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0025	1667	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0026	1667	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0027	1667	1	1	0	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0028	1659	1	0	0	1	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR5_chr1_223104404_223148248	0/0	t0029	1659	1	0	1	0	0	0	copy fasta	TLR5	chr1	223104404	223148248
TLR6_chr4_38817897_38861817	1/0	t0001	4308	71	12	15	33	4	6	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0002	4312	56	13	4	35	0	4	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0003	4314	50	0	9	38	1	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0004	4309	46	2	19	16	2	7	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/1	t0005	4313	31	0	3	23	1	3	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0006	4314	17	2	6	2	2	5	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0007	4313	15	3	0	11	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0008	4312	14	13	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0009	4313	12	1	2	7	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0010	4312	8	4	1	0	0	3	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0011	4310	8	0	3	1	0	4	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0012	4312	7	7	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0013	4313	6	1	0	3	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0014	4314	5	2	0	3	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0015	4313	4	0	0	4	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0016	4313	4	3	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0017	4314	3	1	1	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0018	4314	2	1	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0019	4314	2	0	0	2	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0020	4313	2	0	0	0	0	2	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0021	4313	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0022	4312	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817