JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TLR6_chr4_38817897_38861817	0/0	t0023	4313	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0024	4313	2	1	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0025	4313	2	2	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0026	4313	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0027	4314	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0028	4313	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0029	4312	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0030	4312	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0031	4313	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0032	4312	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0033	4308	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0034	4308	1	0	0	0	1	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0035	4309	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0036	4308	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0037	4314	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0038	4314	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0039	4314	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0040	4314	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0041	4315	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0042	4315	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0043	4315	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0044	4315	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0045	4316	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0046	4316	1	0	0	0	1	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0047	4313	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0048	4314	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0049	4313	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0050	4314	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0051	4314	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0052	4315	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0053	4313	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0054	4313	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0055	4312	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0056	4314	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0057	4314	1	0	1	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0058	4314	1	0	0	0	0	1	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0059	4307	1	1	0	0	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR6_chr4_38817897_38861817	0/0	t0060	4312	1	0	0	1	0	0	copy fasta	TLR6	chr4	38817897	38861817
TLR7_chrX_12862072_12895361	0/0	t0001	1854	145	8	17	103	3	14	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	1/1	t0002	1854	132	54	34	21	6	15	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0003	1855	10	1	2	7	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0004	1855	7	0	1	6	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0005	1854	7	0	0	7	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0006	1854	6	6	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0007	1854	4	4	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0008	1854	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0009	1854	1	1	0	0	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0010	1856	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0011	1854	1	0	0	1	0	0	copy fasta	TLR7	chrX	12862072	12895361
TLR7_chrX_12862072_12895361	0/0	t0012	1854	1	0	0	0	0	1	copy fasta	TLR7	chrX	12862072	12895361