JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TM4SF18_chr3_149313498_149338636	0/0	t0004	3121	38	0	5	22	1	10	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0005	3122	21	3	3	13	0	2	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0006	3122	9	7	2	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0007	3122	9	7	2	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0008	3122	8	8	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0009	3122	6	0	2	0	3	1	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0010	3122	4	4	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0011	3122	4	0	0	4	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0012	3122	3	3	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0013	3122	2	2	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0014	3122	2	1	1	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0015	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0016	3122	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0017	3121	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0018	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0019	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0020	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0021	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	1/0	t0022	3122	1	0	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0023	3122	1	0	1	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0024	3122	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0025	3107	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0026	3122	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0027	3122	1	1	0	0	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0028	3122	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0029	3122	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF18_chr3_149313498_149338636	0/0	t0030	3121	1	0	0	1	0	0	copy fasta	TM4SF18	chr3	149313498	149338636
TM4SF19_chr3_196318547_196343388	1/1	t0001	396	369	84	73	148	16	46	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF19_chr3_196318547_196343388	0/0	t0002	396	1	0	1	0	0	0	copy fasta	TM4SF19	chr3	196318547	196343388
TM4SF1_chr3_149364022_149382649	0/1	t0001	947	369	79	75	166	13	35	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	1/0	t0002	947	45	4	5	21	5	9	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0003	948	12	10	2	0	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0004	947	2	0	0	0	0	2	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0005	947	1	0	0	0	0	1	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0006	947	1	0	0	1	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0007	947	1	1	0	0	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0008	947	1	0	1	0	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0009	947	1	0	0	0	0	1	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF1_chr3_149364022_149382649	0/0	t0010	948	1	0	1	0	0	0	copy fasta	TM4SF1	chr3	149364022	149382649
TM4SF20_chr2_227357038_227384306	0/1	t0001	1724	147	10	29	85	5	17	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	1/0	t0002	1725	133	19	24	64	6	19	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0003	1725	55	18	8	24	4	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0004	1725	35	8	9	15	0	3	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0005	1728	32	10	1	19	0	2	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0006	1726	14	11	0	2	0	1	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0007	1729	11	9	0	0	0	2	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0008	1724	9	0	0	9	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0009	1724	6	0	0	6	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0010	1726	5	0	0	2	0	3	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0011	1725	4	4	0	0	0	0	copy fasta	TM4SF20	chr2	227357038	227384306