JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TM4SF20_chr2_227357038_227384306	0/0	t0012	1725	3	2	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0013	1725	3	3	0	0	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0014	1725	2	0	0	2	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0015	1724	2	0	0	2	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0016	1725	2	0	0	2	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0017	1728	2	0	0	2	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0018	1724	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0019	1725	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0020	1725	1	0	0	0	1	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0021	1726	1	0	0	1	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF20_chr2_227357038_227384306	0/0	t0022	1725	1	0	1	0	0	0	copy fasta	TM4SF20	chr2	227357038	227384306
TM4SF4_chr3_149469697_149508394	1/0	t0001	883	184	62	16	99	1	5	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/1	t0002	883	119	17	41	27	13	20	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0003	883	92	0	10	64	1	17	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0004	883	8	8	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0005	883	6	2	0	0	1	3	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0006	883	5	4	1	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0007	883	1	1	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0008	883	1	1	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0009	883	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0010	883	1	0	0	1	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0011	883	1	0	0	0	0	1	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF4_chr3_149469697_149508394	0/0	t0012	883	1	1	0	0	0	0	copy fasta	TM4SF4	chr3	149469697	149508394
TM4SF5_chr17_4766886_4788211	1/0	t0001	121	294	67	52	147	12	15	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/1	t0002	134	159	27	20	73	6	32	copy fasta	TM4SF5	chr17	4766886	4788211
TM4SF5_chr17_4766886_4788211	0/0	t0003	121	1	0	0	0	0	1	copy fasta	TM4SF5	chr17	4766886	4788211
TM6SF1_chr15_83102645_83142408	1/1	t0001	773	284	88	64	89	9	32	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	t0002	773	2	0	0	0	0	2	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	t0003	773	1	1	0	0	0	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	t0004	773	1	0	0	0	1	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	t0005	773	1	0	0	1	0	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF1_chr15_83102645_83142408	0/0	t0006	773	1	1	0	0	0	0	copy fasta	TM6SF1	chr15	83102645	83142408
TM6SF2_chr19_19259366_19278301	1/1	t0001	385	351	76	62	159	15	37	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	t0002	385	39	15	12	0	3	9	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	t0003	385	3	3	0	0	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	t0004	385	2	0	0	2	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM6SF2_chr19_19259366_19278301	0/0	t0005	385	1	0	0	1	0	0	copy fasta	TM6SF2	chr19	19259366	19278301
TM7SF2_chr11_65106872_65121230	1/1	t0001	322	359	83	71	148	16	39	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	t0002	322	20	10	1	8	0	1	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF2_chr11_65106872_65121230	0/0	t0003	322	1	1	0	0	0	0	copy fasta	TM7SF2	chr11	65106872	65121230
TM7SF3_chr12_26966579_27019384	0/0	t0001	2603	117	24	10	65	3	15	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0002	2604	57	4	20	23	2	8	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0003	2604	51	6	2	37	1	5	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0004	2600	50	6	7	31	3	3	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0005	2604	32	0	8	24	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0006	2604	31	6	12	2	3	8	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/1	t0007	2604	14	5	4	0	2	2	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	1/0	t0008	2603	11	3	5	0	0	2	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0009	2604	9	9	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0010	2603	6	1	2	0	1	2	copy fasta	TM7SF3	chr12	26966579	27019384