JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TM7SF3_chr12_26966579_27019384	0/0	t0011	2602	5	0	0	5	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0012	2605	4	0	0	4	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0013	2603	4	4	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0014	2604	3	3	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0015	2603	3	3	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0016	2603	3	1	1	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0017	2602	3	1	0	2	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0018	2604	3	3	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0019	2603	2	0	0	2	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0020	2603	2	2	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0021	2604	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0022	2603	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0023	2604	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0024	2604	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0025	2605	1	0	1	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0026	2604	1	1	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0027	2604	1	1	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0028	2603	1	1	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0029	2603	1	0	0	0	1	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0030	2604	1	1	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0031	2605	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0032	2601	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0033	2605	1	0	0	0	0	1	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0034	2600	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0035	2600	1	0	0	0	0	1	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0036	2603	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0037	2599	1	1	0	0	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0038	2600	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0039	2604	1	0	0	1	0	0	copy fasta	TM7SF3	chr12	26966579	27019384
TM7SF3_chr12_26966579_27019384	0/0	t0040	2603	1	0	0	0	0	1	copy fasta	TM7SF3	chr12	26966579	27019384
TM9SF1_chr14_24184149_24200441	1/0	t0001	380	226	24	40	119	10	32	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/1	t0002	380	195	61	32	82	6	13	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0003	381	6	5	0	0	0	1	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0004	380	2	0	2	0	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0005	380	1	0	0	1	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0006	380	1	0	0	1	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0007	381	1	0	0	1	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0008	380	1	0	0	1	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF1_chr14_24184149_24200441	0/0	t0009	380	1	0	0	1	0	0	copy fasta	TM9SF1	chr14	24184149	24200441
TM9SF2_chr13_99496472_99569048	1/0	t0001	1426	252	64	37	110	11	29	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/1	t0002	1426	59	7	13	27	6	5	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0003	1426	8	8	0	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0004	1426	7	7	0	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0005	1426	1	0	0	0	1	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0006	1426	1	0	0	1	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0007	1426	1	0	0	0	0	1	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0008	1426	1	0	0	0	0	1	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0009	1426	1	0	1	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF2_chr13_99496472_99569048	0/0	t0010	1426	1	0	1	0	0	0	copy fasta	TM9SF2	chr13	99496472	99569048
TM9SF3_chr10_96513110_96592012	0/1	t0001	4332	113	14	19	54	7	18	copy fasta	TM9SF3	chr10	96513110	96592012